PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21330.3 Da    PI: 5.7449
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-152870547
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    ++ + q +f+kR+ g++ K  ELSvLC a+ a+ii s++ kly
  XP_004497957.1 28 EEHKSQLSFTKRKLGLFNKVTELSVLCHAKTALIITSKDKKLY 70
                    4567899***********************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-121575IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.5861576IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-161686IPR002100Transcription factor, MADS-box
PfamPF003196.3E-132970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAFIEGNNLA TIPNNRKRKF ENKKVEDEEH KSQLSFTKRK LGLFNKVTEL SVLCHAKTAL  60
IITSKDKKLY ACGYPNVDTV LRHFLEGQQN PIDGEKQMMQ KEEETVENLR VEYEVLQDQL  120
KEEKKNLQVV TEAQKNSACI PSWWDDSIDD MSLESLQLFK TSLENLKLNL ILSLDEKRIQ  180
YDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497957.11e-133PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A072V2S92e-56A0A072V2S9_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA07G05061.13e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-21AGAMOUS-like 62